The side
chain docking module is made available as a standalone package.
The side
chains docking can be performed using free atoms or also by using the electron
density only (slower but in low resolution better).
The program
will then build Rotamers and refine them in real space by torsional refinement
if the user chooses to do so.
The inputs
are similar to the other modules.
We
apologize fot the lack of a more extensive write-up which will be available as
soon as we can. To be exact all complaints and/or motivation emails must be
addressed to s.cohen@nki.nl.